5DCQ Structural Protein date Aug 24, 2015
title Crystal Structure Of Bacterial Adhesin, Fne From Streptococc Spp. Equi.
authors M.Tiouajni, M.Graille, H.Van Tilbeurgh
compound source
Molecule: Artificial Repeat Proteins (Alpharep3)
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli M15
Expression_system_taxid: 1007065

Molecule: Fibronectin-Binding Protein
Chain: D, E, F
Fragment: Unp Residues 35-299
Engineered: Yes
Organism_scientific: Streptococcus Equi Subsp. Equi
Organism_taxid: 148942
Gene: Fne
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 61
R_factor 0.167 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.688 113.688 152.623 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.83 Å
ligand FMT enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, D, E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (377 Kb) [Save to disk]
  • Biological Unit Coordinates (5dcq.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (5dcq.pdb2.gz) 127 Kb
  • Biological Unit Coordinates (5dcq.pdb3.gz) 125 Kb
  • Biological Unit Coordinates (5dcq.pdb4.gz) 125 Kb
  • Biological Unit Coordinates (5dcq.pdb5.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 5DCQ
  • CSU: Contacts of Structural Units for 5DCQ
  • Structure Factors (1648 Kb)
  • Retrieve 5DCQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DCQ from S2C, [Save to disk]
  • Re-refined 5dcq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DCQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DCQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dcq_B] [5dcq_E] [5dcq_A] [5dcq_D] [5dcq_C] [5dcq] [5dcq_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DCQ: [EZ_HEAT ] by SMART
    • Other resources with information on 5DCQ
  • Community annotation for 5DCQ at PDBWiki (http://pdbwiki.org)

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