5DEP		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	PO4, UD1	enzyme
Gene	PSPA7
Gene Ontology	Chain Function Process Component C, F, A, D, E, B
Primary reference	Structures of Pseudomonas aeruginosa LpxA Reveal the Basis for Its Substrate Selectivity., Smith EW, Zhang X, Behzadi C, Andrews LD, Cohen F, Chen Y, Biochemistry. 2015 Sep 29;54(38):5937-48. doi: 10.1021/acs.biochem.5b00720. Epub , 2015 Sep 18. PMID:26352800

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk] Biological Unit Coordinates (5dep.pdb1.gz) 123 Kb Biological Unit Coordinates (5dep.pdb2.gz) 124 Kb LPC: Ligand-Protein Contacts for 5DEP CSU: Contacts of Structural Units for 5DEP Structure Factors (1237 Kb) Retrieve 5DEP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DEP from S2C, [Save to disk] Re-refined 5dep structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DEP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dep] [5dep_A] [5dep_B] [5dep_C] [5dep_D] [5dep_E] [5dep_F] SWISS-PROT database:

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