5DFZ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


Primary referenceStructure and flexibility of the endosomal Vps34 complex reveals the basis of its function on membranes., Rostislavleva K, Soler N, Ohashi Y, Zhang L, Pardon E, Burke JE, Masson GR, Johnson C, Steyaert J, Ktistakis NT, Williams RL, Science. 2015 Oct 9;350(6257):aac7365. doi: 10.1126/science.aac7365. PMID:26450213
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk]
  • Biological Unit Coordinates (5dfz.pdb1.gz) 290 Kb
  • CSU: Contacts of Structural Units for 5DFZ
  • Structure Factors (986 Kb)
  • Retrieve 5DFZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DFZ from S2C, [Save to disk]
  • Re-refined 5dfz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DFZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dfz] [5dfz_A] [5dfz_B] [5dfz_C] [5dfz_D] [5dfz_E] [5dfz_G]
  • SWISS-PROT database:
  • Domains found in 5DFZ: [IGv] [PI3K_C2] [PI3Ka] [PI3Kc] [STYKc] [WD40 ] by SMART

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