5DGA date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 1FZ, EDA, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Kinetic Analysis of Miscoding Opposite the DNA Adduct 1,N6-Ethenodeoxyadenosine by Human Translesion DNA Polymerase eta., Patra A, Su Y, Zhang Q, Johnson KM, Guengerich FP, Egli M, J Biol Chem. 2016 May 16. pii: jbc.M116.732487. PMID:27226627
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5dga.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 5DGA
  • CSU: Contacts of Structural Units for 5DGA
  • Structure Factors (554 Kb)
  • Retrieve 5DGA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DGA from S2C, [Save to disk]
  • Re-refined 5dga structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DGA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dga] [5dga_A] [5dga_P] [5dga_T]
  • SWISS-PROT database:

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