5DGA	Transferase Dna	date	Aug 27, 2015
title	Crystal Structure Of Human Dna Polymerase Eta Extending An 1 Ethenodeoxyadenosine : Dt Pair By Inserting Dtmpnpp Opposit Da
authors	A.Patra, M.Egli
compound		source
Molecule: Dna Polymerase Eta Chain: A Fragment: Unp Residues 1-432 Synonym: Rad30 Homolog A,Xeroderma Pigmentosum Variant Type Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polh, Rad30, Rad30a, Xpv Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Cpaptpap(Eda)Ptpgpapcpgpcpt Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Chemically Synthesized
Molecule: Dna (5'-D(Apgpcpgptpcpapt)-3') Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Chemically Synthesized
symmetry	Space Group: P 61	R_factor 0.156 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.419 98.419 81.974 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	1FZ, EDA, MG	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and Kinetic Analysis of Miscoding Opposite the DNA Adduct 1,N6-Ethenodeoxyadenosine by Human Translesion DNA Polymerase eta., Patra A, Su Y, Zhang Q, Johnson KM, Guengerich FP, Egli M, J Biol Chem. 2016 May 16. pii: jbc.M116.732487. PMID:27226627

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (5dga.pdb1.gz) 83 Kb LPC: Ligand-Protein Contacts for 5DGA CSU: Contacts of Structural Units for 5DGA Structure Factors (554 Kb) Retrieve 5DGA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DGA from S2C, [Save to disk] Re-refined 5dga structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5DGA

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dga_A] [5dga] [5dga_T] [5dga_P] SWISS-PROT database: Domain organization of by SWISSPFAM

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