5DGH	Transferase	date	Aug 27, 2015
title	Crystal Structure Of The Catalytic Domain Of Human Diphospho Pentakisphosphate Kinase 2 (Ppip5k2) In Complex With Amp-Pn (Pcp)-Ip5
authors	H.Wang, S.B.Shears
compound		source
Molecule: Inositol Hexakisphosphate And Diphosphoinositol- Pentakisphosphate Kinase 2; Chain: A Synonym: Diphosphoinositol Pentakisphosphate Kinase 2,Histi Phosphatase Domain-Containing Protein 1,Insp6 And Pp-Ip5 Ki Vip1 Homolog 2,Hsvip2; Ec: 2.7.4.21,2.7.4.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ppip5k2, Hisppd1, Kiaa0433, Vip2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Arctic Express (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest566
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.900 110.340 41.253 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	5A3, ACT, ANP, EDO, MG	enzyme	Transferase E.C.2.7.4.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Cellular Cations Control Conformational Switching of Inositol Pyrophosphate Analogues., Hager A, Wu M, Wang H, Brown NW Jr, Shears SB, Veiga N, Fiedler D, Chemistry. 2016 Jul 27. doi: 10.1002/chem.201601754. PMID:27460418

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (5dgh.pdb1.gz) 59 Kb LPC: Ligand-Protein Contacts for 5DGH CSU: Contacts of Structural Units for 5DGH Structure Factors (428 Kb) Retrieve 5DGH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DGH from S2C, [Save to disk] Re-refined 5dgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dgh] [5dgh_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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