5DIR		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	5BV, ALO, IIL, MLE, OLC	enzyme
Gene Ontology	Chain Function Process Component D, C, A, B
Primary reference	Structural basis of lipoprotein signal peptidase II action and inhibition by the antibiotic globomycin., Vogeley L, El Arnaout T, Bailey J, Stansfeld PJ, Boland C, Caffrey M, Science. 2016 Feb 19;351(6275):876-80. doi: 10.1126/science.aad3747. PMID:26912896

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk] Biological Unit Coordinates (5dir.pdb1.gz) 32 Kb Biological Unit Coordinates (5dir.pdb2.gz) 31 Kb Biological Unit Coordinates (5dir.pdb3.gz) 30 Kb Biological Unit Coordinates (5dir.pdb4.gz) 30 Kb LPC: Ligand-Protein Contacts for 5DIR CSU: Contacts of Structural Units for 5DIR Structure Factors (430 Kb) Retrieve 5DIR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DIR from S2C, [Save to disk] Re-refined 5dir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DIR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dir] [5dir_A] [5dir_B] [5dir_C] [5dir_D] [5dir_E] [5dir_F] [5dir_G] [5dir_H] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---