5DJ3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5DK, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStreptomyces wadayamensis MppP Is a Pyridoxal 5'-Phosphate-Dependent l-Arginine alpha-Deaminase, gamma-Hydroxylase in the Enduracididine Biosynthetic Pathway., Han L, Schwabacher AW, Moran GR, Silvaggi NR, Biochemistry. 2015 Nov 17. PMID:26551990
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (669 Kb) [Save to disk]
  • Biological Unit Coordinates (5dj3.pdb1.gz) 331 Kb
  • Biological Unit Coordinates (5dj3.pdb2.gz) 331 Kb
  • Biological Unit Coordinates (5dj3.pdb3.gz) 657 Kb
  • LPC: Ligand-Protein Contacts for 5DJ3
  • CSU: Contacts of Structural Units for 5DJ3
  • Structure Factors (878 Kb)
  • Retrieve 5DJ3 in mmCIF format [Save to disk]
  • Re-refined 5dj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dj3] [5dj3_A] [5dj3_B] [5dj3_C] [5dj3_D]
  • SWISS-PROT database:

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