OCA Atlas for 5DJ4

5DJ4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

LEU

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, C, E, D, A		mitochondrial DNA metabolic ...

Primary reference

Structural basis for leucine sensing by the Sestrin2-mTORC1 pathway., Saxton RA, Knockenhauer KE, Wolfson RL, Chantranupong L, Pacold ME, Wang T, Schwartz TU, Sabatini DM, Science. 2015 Nov 19. pii: aad2087. PMID:26586190

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (600 Kb) [Save to disk]

Biological Unit Coordinates (5dj4.pdb1.gz) 124 Kb

Biological Unit Coordinates (5dj4.pdb2.gz) 123 Kb

Biological Unit Coordinates (5dj4.pdb3.gz) 125 Kb

Biological Unit Coordinates (5dj4.pdb4.gz) 110 Kb

Biological Unit Coordinates (5dj4.pdb5.gz) 124 Kb

Biological Unit Coordinates (5dj4.pdb6.gz) 364 Kb

Biological Unit Coordinates (5dj4.pdb7.gz) 360 Kb

Biological Unit Coordinates (5dj4.pdb8.gz) 352 Kb

LPC: Ligand-Protein Contacts for 5DJ4

CSU: Contacts of Structural Units for 5DJ4

Structure Factors (806 Kb)

Retrieve 5DJ4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5DJ4 from S2C, [Save to disk]

Re-refined 5dj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DJ4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dj4] [5dj4_A] [5dj4_B] [5dj4_C] [5dj4_D] [5dj4_E]

SWISS-PROT database:

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