5DJY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, FUC, GAL, MAN, NAG enzyme
Primary referenceComputationally Designed Bispecific Antibodies using Negative State Repertoires., Leaver-Fay A, Froning KJ, Atwell S, Aldaz H, Pustilnik A, Lu F, Huang F, Yuan R, Hassanali S, Chamberlain AK, Fitchett JR, Demarest SJ, Kuhlman B, Structure. 2016 Apr 5;24(4):641-51. doi: 10.1016/j.str.2016.02.013. Epub 2016 Mar, 17. PMID:26996964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (5djy.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 5DJY
  • CSU: Contacts of Structural Units for 5DJY
  • Structure Factors (598 Kb)
  • Retrieve 5DJY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DJY from S2C, [Save to disk]
  • Re-refined 5djy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DJY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5djy] [5djy_A] [5djy_B] [5djy_C]
  • SWISS-PROT database:
  • Domains found in 5DJY: [IG_like] [IGc1 ] by SMART

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