5DKC	Hydrolase	date	Sep 03, 2015
title	Crystal Structure Of The Bromodomain Of Human Brm (Smarca2) With Pfi-3 Chemical Probe
authors	C.Tallant, D.R.Owen, B.S.Gerstenberger, O.Fedorov, P.Savitsky, G. Alonso, M.Fonseca, T.Krojer, P.Filippakopoulos, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Muller, S.Knapp
compound		source
Molecule: Probable Global Transcription Activator Snf2l2 Chain: A Fragment: Unp Residues 1373-1493 Synonym: Atp-Dependent Helicase Smarca2,Brg1-Associated Fac Baf190b,Protein Brahma Homolog,Hbrm,Snf2-Alpha,Swisnf-Rela Matrix-Associated Actin-Dependent Regulator Of Chromatin Su Member 2; Ec: 3.6.4.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smarca2, Baf190b, Brm, Snf2a, Snf2l2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: H 3	R_factor 0.194 R_Free 0.211
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.424 74.424 89.856 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	5BW, ZN	enzyme	Hydrolase E.C.3.6.4 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (5dkc.pdb1.gz) 22 Kb LPC: Ligand-Protein Contacts for 5DKC CSU: Contacts of Structural Units for 5DKC Structure Factors (460 Kb) Retrieve 5DKC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DKC from S2C, [Save to disk] Re-refined 5dkc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DKC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DKC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dkc_A] [5dkc] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DKC: [BROMO ] by SMART

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