5DLF	Crystal Structure of Human DNA Polymerase Eta Inserting dATP Opposite O4-Methylhymidine	date
authors	Patra, A., OFlaherty, D.K., Egli, M.
compound		source
symmetry		R_factor R_Free 0.21707
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.97
ligand	5DB, CA, DTP, GOL	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Lesion Orientation of O(4)-Alkylthymidine Influences Replication by Human DNA Polymerase eta., O'Flaherty DK, Patra A, Su Y, Guengerich FP, Egli M, Wilds CJ, Chem Sci. 2016 Aug 1;7(8):4896-4904. doi: 10.1039/C6SC00666C. Epub 2016 Apr 26. PMID:27574558

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (5dlf.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 5DLF CSU: Contacts of Structural Units for 5DLF Structure Factors (902 Kb) Retrieve 5DLF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DLF from S2C, [Save to disk] Re-refined 5dlf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DLF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DLF

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5dlf from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dlf] [5dlf_P] [5dlf_T] [5dlf_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5DLF

Community annotation for 5DLF at PDBWiki (http://pdbwiki.org)

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