5DLP Hydrolase date Sep 07, 2015
title Acetylcholinesterase Methylene Blue No Peg
authors O.Dym
compound source
Molecule: Acetylcholinesterase
Chain: A
Synonym: Ache
Ec: 3.1.1.7
 Organism_scientific: Torpedo Californica
Organism_common: Pacific Electric Ray
Organism_taxid: 7787
symmetry Space Group: P 31 2 1
R_factor 0.193 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.059 111.059 137.172 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand BMA, FUC, MAN, MBT, NAG, SO4 enzyme Hydrolase E.C.3.1.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • acetylcholine catabolic proc...

    • Primary referenceThe impact of crystallization conditions on structure-based drug design: A case study on the methylene blue/acetylcholinesterase complex., Dym O, Song W, Felder C, Roth E, Shnyrov V, Ashani Y, Xu Y, Joosten RP, Weiner L, Sussman JL, Silman I, Protein Sci. 2016 Mar 14. doi: 10.1002/pro.2923. PMID:26990888
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (5dlp.pdb1.gz) 347 Kb
  • LPC: Ligand-Protein Contacts for 5DLP
  • CSU: Contacts of Structural Units for 5DLP
  • Structure Factors (576 Kb)
  • Retrieve 5DLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DLP from S2C, [Save to disk]
  • Re-refined 5dlp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DLP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dlp_A] [5dlp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5DLP
  • Community annotation for 5DLP at PDBWiki (http://pdbwiki.org)

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