5DM7 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand HGR, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3


A


B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


Z


Primary referenceCrystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A., Kaminishi T, Schedlbauer A, Fabbretti A, Brandi L, Ochoa-Lizarralde B, He CG, Milon P, Connell SR, Gualerzi CO, Fucini P, Nucleic Acids Res. 2015 Nov 16;43(20):10015-25. doi: 10.1093/nar/gkv975. Epub, 2015 Oct 12. PMID:26464437
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1760 Kb) [Save to disk]
  • Biological Unit Coordinates (5dm7.pdb1.gz) 1746 Kb
  • LPC: Ligand-Protein Contacts for 5DM7
  • CSU: Contacts of Structural Units for 5DM7
  • Structure Factors (4592 Kb)
  • Retrieve 5DM7 in mmCIF format [Save to disk]
  • Re-refined 5dm7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DM7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dm7] [5dm7_0] [5dm7_1] [5dm7_2] [5dm7_3] [5dm7_A] [5dm7_B] [5dm7_C] [5dm7_D] [5dm7_E] [5dm7_F] [5dm7_G] [5dm7_H] [5dm7_I] [5dm7_J] [5dm7_K] [5dm7_L] [5dm7_M] [5dm7_N] [5dm7_O] [5dm7_Y] [5dm7_P] [5dm7_X] [5dm7_Q] [5dm7_Z] [5dm7_R] [5dm7_S] [5dm7_T] [5dm7_U] [5dm7_V] [5dm7_W]
  • SWISS-PROT database:
  • Domains found in 5DM7: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART

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