5DM9		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CL, NA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Microcrystal delivery by pulsed liquid droplet for serial femtosecond crystallography., Mafune F, Miyajima K, Tono K, Takeda Y, Kohno JY, Miyauchi N, Kobayashi J, Joti Y, Nango E, Iwata S, Yabashi M, Acta Crystallogr D Struct Biol. 2016 Apr;72(Pt 4):520-3. doi:, 10.1107/S2059798316001480. Epub 2016 Mar 24. PMID:27050131

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (5dm9.pdb1.gz) 22 Kb LPC: Ligand-Protein Contacts for 5DM9 CSU: Contacts of Structural Units for 5DM9 Structure Factors (134 Kb) Retrieve 5DM9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DM9 from S2C, [Save to disk] Re-refined 5dm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DM9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dm9] [5dm9_A] SWISS-PROT database: Domain found in 5DM9: [LYZ1 ] by SMART

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