5DMG date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand SEP enzyme
Primary referenceVH-VL orientation prediction for antibody humanization candidate selection: A case study., Bujotzek A, Lipsmeier F, Harris SF, Benz J, Kuglstatter A, Georges G, MAbs. 2015 Dec 4:0. PMID:26637054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (5dmg.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (5dmg.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (5dmg.pdb3.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 5DMG
  • CSU: Contacts of Structural Units for 5DMG
  • Structure Factors (3465 Kb)
  • Retrieve 5DMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DMG from S2C, [Save to disk]
  • Re-refined 5dmg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dmg] [5dmg_C] [5dmg_D] [5dmg_E] [5dmg_F] [5dmg_H] [5dmg_L] [5dmg_P] [5dmg_X] [5dmg_Z]
  • SWISS-PROT database:
  • Domains found in 5DMG: [IG_like] [IGv ] by SMART

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