5DNW Hydrolase date Sep 10, 2015
title Crystal Structure Of Kai2-Like Protein From Striga (Apo Stat
authors Y.Xu, T.Miyakawa, A.Nakamura, M.Tanokura
compound source
Molecule: Shkai2ib
Chain: A
Engineered: Yes
Organism_scientific: Striga Hermonthica
Organism_taxid: 68872
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-3
symmetry Space Group: P 61 2 2
R_factor 0.177 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.940 75.940 181.470 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.02 Å
ligand EDO, FMT, NA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5dnw.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5DNW
  • CSU: Contacts of Structural Units for 5DNW
  • Structure Factors (378 Kb)
  • Retrieve 5DNW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DNW from S2C, [Save to disk]
  • Re-refined 5dnw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DNW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DNW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dnw_A] [5dnw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DNW
  • Community annotation for 5DNW at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science