5DOG	Lyase	date	Sep 11, 2015
title	Crystal Structure Of Human Carbonic Anhydrase Isozyme II Wit (Benzylamino)-3,5,6-Trifluoro-4-[(2-Phenylethyl)Thio]Benzen Sulfonamide
authors	A.Smirnov, E.Manakova, S.Grazulis
compound		source
Molecule: Carbonic Anhydrase 2 Chain: A Fragment: Human Carbonic Anhydrase II Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II; Ec: 4.2.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ca2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 1 21 1	R_factor 0.162 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.228 41.249 72.351 90.00 104.29 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	5DT, BCN, MES, ZN	enzyme	Lyase E.C.4.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Intrinsic Thermodynamics and Structures of 2,4- and 3,4-Substituted Fluorinated Benzenesulfonamides Binding to Carbonic Anhydrases., Zubriene A, Smirnov A, Dudutiene V, Timm DD, Matuliene J, Michailoviene V, Zaksauskas A, Manakova E, Grazulis S, Matulis D, ChemMedChem. 2016 Dec 21. doi: 10.1002/cmdc.201600509. PMID:28001003

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (5dog.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 5DOG CSU: Contacts of Structural Units for 5DOG Structure Factors (837 Kb) Retrieve 5DOG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DOG from S2C, [Save to disk] Re-refined 5dog structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DOG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DOG

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dog_A] [5dog] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DOG: [Carb_anhydrase ] by SMART

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