5DOR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, A, B, C


Primary referenceCrystal structure of the bacteriophage P2 integrase catalytic domain., Skaar K, Claesson M, Odegrip R, Hogbom M, Haggard-Ljungquist E, Stenmark P, FEBS Lett. 2015 Oct 8. pii: S0014-5793(15)00875-3. doi:, 10.1016/j.febslet.2015.09.026. PMID:26453836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (5dor.pdb1.gz) 106 Kb
  • Biological Unit Coordinates (5dor.pdb2.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 5DOR
  • CSU: Contacts of Structural Units for 5DOR
  • Structure Factors (1707 Kb)
  • Retrieve 5DOR in mmCIF format [Save to disk]
  • Re-refined 5dor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dor] [5dor_A] [5dor_B] [5dor_C] [5dor_D]
  • SWISS-PROT database:

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