5DPD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SAM	enzyme
Primary reference	Structural Insights into Substrate Recognition and Catalysis in OmpB by Protein Lysine Methyltransferases from Rickettsia., Abeykoon AH, Noinaj N, Choi BE, Wise L, He Y, Chao CC, Wang G, Gucek M, Ching WM, Chock PB, Buchanan SK, Yang DC, J Biol Chem. 2016 Jul 29. pii: jbc.M116.723460. PMID:27474738

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk] Biological Unit Coordinates (5dpd.pdb1.gz) 163 Kb LPC: Ligand-Protein Contacts for 5DPD CSU: Contacts of Structural Units for 5DPD Structure Factors (193 Kb) Retrieve 5DPD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DPD from S2C, [Save to disk] Re-refined 5dpd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DPD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dpd] [5dpd_A] [5dpd_B] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---