5DPN date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BGC, CA, XYS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNeutron Crystallographic Studies Reveal Hydrogen Bond and Water-Mediated Interactions between a Carbohydrate-Binding Module and Its Bound Carbohydrate Ligand., Fisher SZ, von Schantz L, Hakansson M, Logan DT, Ohlin M, Biochemistry. 2015 Oct 27;54(42):6435-8. doi: 10.1021/acs.biochem.5b01058. Epub, 2015 Oct 13. PMID:26451738
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5dpn.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 5DPN
  • CSU: Contacts of Structural Units for 5DPN
  • Structure Factors (335 Kb)
  • Retrieve 5DPN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DPN from S2C, [Save to disk]
  • Re-refined 5dpn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DPN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dpn] [5dpn_A]
  • SWISS-PROT database:

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