5DQ8 Transcription date Sep 14, 2015
title Crystal Structure Of Human Transcription Factor Tead2 In Com Flufenamic Acid
authors X.Han, X.Luo
compound source
Molecule: Transcriptional Enhancer Factor Tef-4
Chain: A, B
Fragment: Residues 217-447
Synonym: Tea Domain Family Member 2,Tead-2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead2, Tef4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet29
symmetry Space Group: C 1 2 1
R_factor 0.171 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.819 61.446 80.416 90.00 117.55 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand FLF enzyme
Primary referenceTargeting the Central Pocket in Human Transcription Factor TEAD as a Potential Cancer Therapeutic Strategy., Pobbati AV, Han X, Hung AW, Weiguang S, Huda N, Chen GY, Kang C, Chia CS, Luo X, Hong W, Poulsen A, Structure. 2015 Nov 3;23(11):2076-86. doi: 10.1016/j.str.2015.09.009. Epub 2015, Oct 22. PMID:26592798
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (5dq8.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (5dq8.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 5DQ8
  • CSU: Contacts of Structural Units for 5DQ8
  • Structure Factors (367 Kb)
  • Retrieve 5DQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DQ8 from S2C, [Save to disk]
  • Re-refined 5dq8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DQ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5dq8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dq8_B] [5dq8] [5dq8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DQ8
  • Community annotation for 5DQ8 at PDBWiki (http://pdbwiki.org)

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