5DQA De Novo Protein date Sep 14, 2015
title T3284 Loop Variant Of Beta1
authors B.V.Kabasakal, J.T.Macdonald, W.W.Murray
compound source
Molecule: T3284
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prseta
symmetry Space Group: I 2 2 2
R_factor 0.183 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.060 115.710 167.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.27 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (5dqa.pdb1.gz) 137 Kb
  • Biological Unit Coordinates (5dqa.pdb2.gz) 136 Kb
  • Biological Unit Coordinates (5dqa.pdb3.gz) 136 Kb
  • CSU: Contacts of Structural Units for 5DQA
  • Structure Factors (1012 Kb)
  • Retrieve 5DQA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DQA from S2C, [Save to disk]
  • Re-refined 5dqa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DQA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DQA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dqa_A] [5dqa_B] [5dqa_C] [5dqa]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5DQA
  • Community annotation for 5DQA at PDBWiki (http://pdbwiki.org)

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