5DQU Hydrolase Dna date Sep 15, 2015
title Crystal Structure Of Cas-Dna-10 Complex
authors J.Wang, J.Li, H.Zhao, G.Sheng, M.Wang, M.Yin, Y.Wang
compound source
Molecule: Crispr-Associated Endonuclease Cas1
Chain: A, D, C, B
Ec: 3.1.-.-
Engineered: Yes
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
Strain: K12
Gene: Ygbt, Cas1, B2755, Jw2725
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: Crispr-Associated Endoribonuclease Cas2
Chain: E, F
Ec: 3.1.-.-
Engineered: Yes

Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
Strain: K12
Gene: Ygbf, Cas2, B2754, Jw5438
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Dna (5'-D(Gpapgptpcpgpaptpgpcptptptp 3');
Chain: H, I
Engineered: Yes
Other_details: Dna-10-1

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (5'-D(Ptptpgpcpaptpcpgpapcptpc)-3
Chain: J, G
Engineered: Yes
Other_details: Dna-10-2

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.265 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.095 195.775 194.716 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.50 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • nuclease activity
  • endonuclease activity


  • F, E
  • nuclease activity
  • endonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (5dqu.pdb1.gz) 212 Kb
  • CSU: Contacts of Structural Units for 5DQU
  • Structure Factors (282 Kb)
  • Retrieve 5DQU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DQU from S2C, [Save to disk]
  • Re-refined 5dqu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DQU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DQU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dqu_J] [5dqu_G] [5dqu_B] [5dqu] [5dqu_E] [5dqu_H] [5dqu_C] [5dqu_A] [5dqu_I] [5dqu_F] [5dqu_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DQU
  • Community annotation for 5DQU at PDBWiki (http://pdbwiki.org)

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