5DST	Transferase	date	Sep 17, 2015
title	Crystal Structure Of Human Prmt8 In Complex With Sah
authors	S.Toma-Fukai, T.Shimizu
compound		source
Molecule: Protein Arginine N-Methyltransferase 8 Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O Fragment: Unp Residues 68-394 Synonym: Heterogeneous Nuclear Ribonucleoprotein Methyltran Like Protein 4; Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Prmt8, Hrmt1l3, Hrmt1l4 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.224 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 199.983 130.943 294.377 90.00 106.48 90.00
method	X-Ray Diffraction	resolution	2.96 Å
ligand	SAH	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component F, A, O, J, N, K, E, B, H, M, C, D, I, G, L
Primary reference	Novel helical assembly in arginine methyltransferase 8., Toma-Fukai S, Kim JD, Park KE, Kuwabara N, Shimizu N, Krayukuhina E, Uchiyama S, Fukamizu A, Shimizu T, J Mol Biol. 2016 Feb 11. pii: S0022-2836(16)00112-1. doi:, 10.1016/j.jmb.2016.02.007. PMID:26876602

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (784 Kb) [Save to disk] Biological Unit Coordinates (5dst.pdb1.gz) 118 Kb Biological Unit Coordinates (5dst.pdb2.gz) 118 Kb Biological Unit Coordinates (5dst.pdb3.gz) 119 Kb Biological Unit Coordinates (5dst.pdb4.gz) 118 Kb Biological Unit Coordinates (5dst.pdb5.gz) 119 Kb Biological Unit Coordinates (5dst.pdb6.gz) 119 Kb Biological Unit Coordinates (5dst.pdb7.gz) 119 Kb Biological Unit Coordinates (5dst.pdb8.gz) 119 Kb LPC: Ligand-Protein Contacts for 5DST CSU: Contacts of Structural Units for 5DST Structure Factors (2864 Kb) Retrieve 5DST in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DST from S2C, [Save to disk] Re-refined 5dst structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DST in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DST

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dst_H] [5dst_J] [5dst_E] [5dst_D] [5dst_G] [5dst_N] [5dst] [5dst_C] [5dst_I] [5dst_O] [5dst_M] [5dst_L] [5dst_A] [5dst_K] [5dst_F] [5dst_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5DST

Community annotation for 5DST at PDBWiki (http://pdbwiki.org)

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