5DTV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5FS enzyme
Primary referencePredictive features of ligand-specific signaling through the estrogen receptor., Nwachukwu JC, Srinivasan S, Zheng Y, Wang S, Min J, Dong C, Liao Z, Nowak J, Wright NJ, Houtman R, Carlson KE, Josan JS, Elemento O, Katzenellenbogen JA, Zhou HB, Nettles KW, Mol Syst Biol. 2016 Apr 22;12(4):864. doi: 10.15252/msb.20156701. PMID:27107013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (5dtv.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 5DTV
  • CSU: Contacts of Structural Units for 5DTV
  • Structure Factors (179 Kb)
  • Retrieve 5DTV in mmCIF format [Save to disk]
  • Re-refined 5dtv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DTV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DTV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5dtv from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dtv] [5dtv_A] [5dtv_B] [5dtv_C] [5dtv_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DTV: [HOLI ] by SMART
    • Other resources with information on 5DTV
  • Community annotation for 5DTV at PDBWiki (http://pdbwiki.org)

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