5DUI Transcription Dna date Sep 18, 2015
title Identification Of A New Foxo1 Binding Site That Precludes Cr At The Glucose-6-Phosphatase Catalytic Subunit Gene Promote
authors P.Singh, J.A.Endrizzi, Y.I.Chi
compound source
Molecule: Forkhead Box Protein O1
Chain: A, B
Fragment: Unp Residues 151-259
Synonym: Forkhead Box Protein O1a,Forkhead In Rhabdomyosarc
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Foxo1, Fkhr, Foxo1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Tptptptpcptpaptptptptpapcpgptpapapaptp 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'- D(Aptpgpaptptptpapcpgptpapapapaptpapgpap 3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.610 79.026 48.266 90.00 90.79 90.00
method X-Ray Diffractionresolution 2.31 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures reveal a new and novel FoxO1 binding site within the human glucose-6-phosphatase catalytic subunit 1 gene promoter., Singh P, Han EH, Endrizzi JA, O'Brien RM, Chi YI, J Struct Biol. 2017 Apr;198(1):54-64. doi: 10.1016/j.jsb.2017.02.006. Epub 2017, Feb 20. PMID:28223045
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5dui.pdb1.gz) 96 Kb
  • CSU: Contacts of Structural Units for 5DUI
  • Structure Factors (300 Kb)
  • Retrieve 5DUI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DUI from S2C, [Save to disk]
  • Re-refined 5dui structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DUI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DUI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5dui from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dui_A] [5dui_D] [5dui] [5dui_C] [5dui_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DUI: [FH ] by SMART
  • Other resources with information on 5DUI
  • Community annotation for 5DUI at PDBWiki (http://pdbwiki.org)

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