5DWU Immune System date Sep 23, 2015
title Beta Common Receptor In Complex With A Fab
authors U.Dhagat, M.W.Parker
compound source
Molecule: Cytokine Receptor Common Subunit Beta
Chain: A
Synonym: Cdw131,Gm-Csfil-3il-5 Receptor Common Beta Subun
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf2rb, Il3rb, Il5rb
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Cytokine Receptor Common Subunit Beta
Chain: B
Synonym: Cdw131,Gm-Csfil-3il-5 Receptor Common Beta Subun
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf2rb, Il3rb, Il5rb
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Fab - Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Fab - Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.289 R_Free 0.330
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.953 71.289 221.234 90.00 102.71 90.00
method X-Ray Diffractionresolution 3.97 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceCSL311, a novel, potent, therapeutic monoclonal antibody for the treatment of diseases mediated by the common beta chain of the IL-3, GM-CSF and IL-5 receptors., Panousis C, Dhagat U, Edwards KM, Rayzman V, Hardy MP, Braley H, Gauvreau GM, Hercus TR, Smith S, Sehmi R, McMillan L, Dottore M, McClure BJ, Fabri LJ, Vairo G, Lopez AF, Parker MW, Nash AD, Wilson NJ, Wilson MJ, Owczarek CM, MAbs. 2015 Dec 14:0. PMID:26651396
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]
  • Biological Unit Coordinates (5dwu.pdb1.gz) 300 Kb
  • LPC: Ligand-Protein Contacts for 5DWU
  • CSU: Contacts of Structural Units for 5DWU
  • Structure Factors (857 Kb)
  • Retrieve 5DWU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DWU from S2C, [Save to disk]
  • Re-refined 5dwu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DWU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DWU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dwu_B] [5dwu_A] [5dwu_L] [5dwu_H] [5dwu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5DWU: [FN3] [IG_like] [IGv ] by SMART
  • Other resources with information on 5DWU
  • Community annotation for 5DWU at PDBWiki (http://pdbwiki.org)

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