5DYE Transport Protein date Sep 24, 2015
title Crystal Structure Of The Full Length S156e Mutant Of Human A
authors P.Kitchen, F.Oeberg, J.Sjoehamn, K.Hedfalk, R.M.Bill, A.C.Conner, M.T.Conner, S.Toernroth-Horsefield
compound source
Molecule: Aquaporin-5
Chain: A, B, C, D
Synonym: Aqp-5
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aqp5
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 3 1 2
R_factor 0.279 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.286 174.286 100.858 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand PS6 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referencePlasma Membrane Abundance of Human Aquaporin 5 Is Dynamically Regulated by Multiple Pathways., Kitchen P, Oberg F, Sjohamn J, Hedfalk K, Bill RM, Conner AC, Conner MT, Tornroth-Horsefield S, PLoS One. 2015 Nov 16;10(11):e0143027. doi: 10.1371/journal.pone.0143027., eCollection 2015. PMID:26569106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (5dye.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 5DYE
  • CSU: Contacts of Structural Units for 5DYE
  • Structure Factors (1194 Kb)
  • Retrieve 5DYE in mmCIF format [Save to disk]
  • Re-refined 5dye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DYE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5dye from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dye_D] [5dye] [5dye_A] [5dye_B] [5dye_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DYE
  • Community annotation for 5DYE at PDBWiki (http://pdbwiki.org)

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