5DYG		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ADP	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Role of the D1-D2 Linker of Human VCP/p97 in the Asymmetry and ATPase Activity of the D1-domain., Tang WK, Xia D, Sci Rep. 2016 Jan 28;6:20037. doi: 10.1038/srep20037. PMID:26818443

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (5dyg.pdb1.gz) 427 Kb LPC: Ligand-Protein Contacts for 5DYG CSU: Contacts of Structural Units for 5DYG Structure Factors (500 Kb) Retrieve 5DYG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DYG from S2C, [Save to disk] Re-refined 5dyg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DYG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dyg] [5dyg_A] SWISS-PROT database: Domains found in 5DYG: [AAA] [CDC48_2] [CDC48_N ] by SMART

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