5DYH date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 4TI, CIT, CO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceUnusual Synergism of Transferrin and Citrate in the Regulation of Ti(IV) Speciation, Transport, and Toxicity., Tinoco AD, Saxena M, Sharma S, Noinaj N, Delgado Y, Quinones Gonzalez EP, Conklin SE, Zambrana N, Loza-Rosas SA, Parks TB, J Am Chem Soc. 2016 May 4;138(17):5659-65. doi: 10.1021/jacs.6b01966. Epub 2016, Apr 26. PMID:27070073
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (630 Kb) [Save to disk]
  • Biological Unit Coordinates (5dyh.pdb1.gz) 312 Kb
  • Biological Unit Coordinates (5dyh.pdb2.gz) 316 Kb
  • LPC: Ligand-Protein Contacts for 5DYH
  • CSU: Contacts of Structural Units for 5DYH
  • Structure Factors (1070 Kb)
  • Retrieve 5DYH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DYH from S2C, [Save to disk]
  • Re-refined 5dyh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DYH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dyh] [5dyh_A] [5dyh_B]
  • SWISS-PROT database:
  • Domain found in 5DYH: [TR_FER ] by SMART

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