5DYV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EPE enzyme
Gene VAB18032
Primary referenceThe Catalytic Mechanism of a Natural Diels-Alderase Revealed in Molecular Detail., Byrne MJ, Lees NR, Han LC, van der Kamp MW, Mulholland AJ, Stach JE, Willis CL, Race PR, J Am Chem Soc. 2016 May 18;138(19):6095-8. doi: 10.1021/jacs.6b00232. Epub 2016, May 6. PMID:27140661
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (5dyv.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (5dyv.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (5dyv.pdb3.gz) 43 Kb
  • Biological Unit Coordinates (5dyv.pdb4.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5DYV
  • CSU: Contacts of Structural Units for 5DYV
  • Structure Factors (2685 Kb)
  • Retrieve 5DYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DYV from S2C, [Save to disk]
  • Re-refined 5dyv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dyv] [5dyv_A] [5dyv_B] [5dyv_C] [5dyv_D] [5dyv_E] [5dyv_F] [5dyv_G] [5dyv_H]
  • SWISS-PROT database:

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