OCA Atlas for 5DZK

5DZK

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BEZ

enzyme

Gene
Ontology

Chain	Function	Process	Component
I, h, J, H, i, l, m, K, j, M, N, n, L, k
b, c, A, e, B, C, a, g, f, D, G, F, E, d

Primary reference

Structure and Functional Properties of the active form of the proteolytic complex, ClpP1P2 from Mycobacterium tuberculosis., Li M, Kandror O, Akopian T, Dharkar P, Wlodawer A, Maurizi MR, Goldberg AL, J Biol Chem. 2016 Feb 8. pii: jbc.M115.700344. PMID:26858247

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1666 Kb) [Save to disk]

Biological Unit Coordinates (5dzk.pdb1.gz) 831 Kb

Biological Unit Coordinates (5dzk.pdb2.gz) 830 Kb

LPC: Ligand-Protein Contacts for 5DZK

CSU: Contacts of Structural Units for 5DZK

Structure Factors (3605 Kb)

Retrieve 5DZK in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5DZK from S2C, [Save to disk]

Re-refined 5dzk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DZK in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dzk] [5dzk_1] [5dzk_2] [5dzk_3] [5dzk_4] [5dzk_A] [5dzk_B] [5dzk_C] [5dzk_D] [5dzk_E] [5dzk_F] [5dzk_G] [5dzk_H] [5dzk_I] [5dzk_J] [5dzk_K] [5dzk_L] [5dzk_M] [5dzk_N] [5dzk_O] [5dzk_P] [5dzk_Q] [5dzk_R] [5dzk_S] [5dzk_T] [5dzk_U] [5dzk_V] [5dzk_W] [5dzk_X] [5dzk_Y] [5dzk_Z] [5dzk_a] [5dzk_b] [5dzk_c] [5dzk_d] [5dzk_e] [5dzk_f] [5dzk_g] [5dzk_h] [5dzk_i] [5dzk_j] [5dzk_k] [5dzk_l] [5dzk_m] [5dzk_n] [5dzk_o] [5dzk_p] [5dzk_q] [5dzk_r] [5dzk_s] [5dzk_t] [5dzk_u] [5dzk_v] [5dzk_w] [5dzk_x] [5dzk_y] [5dzk_z]

SWISS-PROT database:

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