5DZL Cell Adhesion date Sep 25, 2015
title Crystal Structure Of The Protein Human Ceacam1
authors Y.H.Huang, A.Russell, A.K.Gandhi, Y.Kondo, Q.Chen, G.A.Petsko, R.S
compound source
Molecule: Carcinoembryonic Antigen-Related Cell Adhesion Mo
Chain: A, B, C, D
Synonym: Biliary Glycoprotein 1,Bgp-1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ceacam1, Bgp, Bgp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.232 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.760 75.760 147.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.40 Å
note 5DZL supersedes 4QYC
Primary referenceCEACAM1 regulates TIM-3-mediated tolerance and exhaustion., Huang YH, Zhu C, Kondo Y, Anderson AC, Gandhi A, Russell A, Dougan SK, Petersen BS, Melum E, Pertel T, Clayton KL, Raab M, Chen Q, Beauchemin N, Yazaki PJ, Pyzik M, Ostrowski MA, Glickman JN, Rudd CE, Ploegh HL, Franke A, Petsko GA, Kuchroo VK, Blumberg RS, Nature. 2014 Oct 26. doi: 10.1038/nature13848. PMID:25363763
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (5dzl.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (5dzl.pdb2.gz) 34 Kb
  • CSU: Contacts of Structural Units for 5DZL
  • Structure Factors (118 Kb)
  • Retrieve 5DZL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DZL from S2C, [Save to disk]
  • Re-refined 5dzl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DZL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DZL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dzl_A] [5dzl] [5dzl_C] [5dzl_B] [5dzl_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DZL: [IG ] by SMART
    • Other resources with information on 5DZL
  • Community annotation for 5DZL at PDBWiki (http://pdbwiki.org)

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