OCA Atlas for 5DZM

5DZM

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, B, C, D	RNA-directed DNA polymerase ... RNA-DNA hybrid ribonuclease ...

Primary reference

Unfolding the HIV-1 reverse transcriptase RNase H domain - how to lose a molecular tug-of-war., Zheng X, Pedersen LC, Gabel SA, Mueller GA, DeRose EF, London RE, Nucleic Acids Res. 2016 Feb 29;44(4):1776-88. doi: 10.1093/nar/gkv1538. Epub 2016, Jan 14. PMID:26773054

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]

Biological Unit Coordinates (5dzm.pdb1.gz) 56 Kb

Biological Unit Coordinates (5dzm.pdb2.gz) 52 Kb

Biological Unit Coordinates (5dzm.pdb3.gz) 56 Kb

Biological Unit Coordinates (5dzm.pdb4.gz) 52 Kb

Biological Unit Coordinates (5dzm.pdb5.gz) 106 Kb

Biological Unit Coordinates (5dzm.pdb6.gz) 106 Kb

Biological Unit Coordinates (5dzm.pdb7.gz) 211 Kb

CSU: Contacts of Structural Units for 5DZM

Structure Factors (245 Kb)

Retrieve 5DZM in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5DZM from S2C, [Save to disk]

Re-refined 5dzm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DZM in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dzm] [5dzm_A] [5dzm_B] [5dzm_C] [5dzm_D]

SWISS-PROT database:

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