5DZO	Immune System	date	Sep 25, 2015
title	Crystal Structure Of Human T-Cell Immunoglobulin And Mucin D Protein 1
authors	S.Yuan, Z.Rao, X.Wang
compound		source
Molecule: Hepatitis A Virus Cellular Receptor 1 Chain: A Fragment: Unp Residues 22-127 Synonym: Havcr-1,Kidney Injury Molecule 1,Kim-1,T-Cell Immu And Mucin Domain-Containing Protein 1,Timd-1,T-Cell Immunog Mucin Receptor 1,Tim-1,T-Cell Membrane Protein 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Havcr1, Kim1, Tim1, Timd1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.157 R_Free 0.176
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.739 50.739 84.162 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.30 Å
ligand	NA, NO3	enzyme
Primary reference	TIM-1 acts a dual-attachment receptor for Ebolavirus by interacting directly with viral GP and the PS on the viral envelope., Yuan S, Cao L, Ling H, Dang M, Sun Y, Zhang X, Chen Y, Zhang L, Su D, Wang X, Rao Z, Protein Cell. 2015 Oct 20. PMID:26487564

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (5dzo.pdb1.gz) 38 Kb LPC: Ligand-Protein Contacts for 5DZO CSU: Contacts of Structural Units for 5DZO Structure Factors (261 Kb) Retrieve 5DZO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DZO from S2C, [Save to disk] Re-refined 5dzo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DZO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DZO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dzo_A] [5dzo] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DZO: [IG ] by SMART

Other resources with information on 5DZO

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