5E02 Hydrolase, Rna Binding Protein Rna date Sep 28, 2015
title Structure Of Rna Helicase Frh A Critical Component Of The Ne Crassa Circadian Clock
authors K.S.Conrad, B.C.Crane
compound source
Molecule: Frq-Interacting Rna Helicase
Chain: A
Synonym: Probable Atp Dependent Rna Helicase
Engineered: Yes
Organism_scientific: Neurospora Crassa
Organism_taxid: 5141
Gene: B9b11.040, Frh, Ncu03363.1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: Rna (5'-R(Apapapa)-3')
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.278 R_Free 0.321
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.432 106.600 125.298 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.80 Å
ligand ADP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock., Conrad KS, Hurley JM, Widom J, Ringelberg CS, Loros JJ, Dunlap JC, Crane BR, EMBO J. 2016 Jun 23. pii: e201694327. PMID:27340124
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (5e02.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 5E02
  • CSU: Contacts of Structural Units for 5E02
  • Structure Factors (162 Kb)
  • Retrieve 5E02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E02 from S2C, [Save to disk]
  • Re-refined 5e02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E02
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e02_A] [5e02] [5e02_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5E02: [DEXDc] [DSHCT] [HELICc ] by SMART
  • Other resources with information on 5E02
  • Community annotation for 5E02 at PDBWiki (http://pdbwiki.org)

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