5E0L Transport Protein date Sep 29, 2015
title Lc8 - Chica (415-424) Complex
authors S.A.Clark, E.B.Barbar, P.A.Karplus
compound source
Molecule: Dynein Light Chain 1, Cytoplasmic
Chain: A
Synonym: 8 Kda Dynein Light Chain,Cut Up Protein
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Ctp, Cdlc1, Ddlc1, Cg6998
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Chica Peptide
Chain: C
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.196 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.695 44.695 204.096 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.31 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Anchored Flexibility Model in LC8 Motif Recognition: Insights from the Chica Complex., Clark S, Nyarko A, Lohr F, Karplus PA, Barbar E, Biochemistry. 2015 Dec 22. PMID:26652654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (5e0l.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 5E0L
  • CSU: Contacts of Structural Units for 5E0L
  • Structure Factors (796 Kb)
  • Retrieve 5E0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E0L from S2C, [Save to disk]
  • Re-refined 5e0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E0L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5e0l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e0l] [5e0l_C] [5e0l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5E0L: [Dynein_light ] by SMART
  • Other resources with information on 5E0L
  • Community annotation for 5E0L at PDBWiki (http://pdbwiki.org)

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