5E1Y Protein Binding date Sep 30, 2015
title Pdz2 Of Lnx2 At 277k, Model With Alternate Conformations
authors D.R.Hekstra, K.I.White, M.A.Socolich, R.Ranganathan
compound source
Molecule: Ligand Of Numb Protein X 2
Chain: A
Fragment: Second Pdz Domain (Unp Residues 336-424)
Synonym: Numb-Binding Protein 2,Pdz Domain-Containing Ring Protein 1;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lnx2, Pdzrn1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28
symmetry Space Group: C 1 2 1
R_factor 0.118 R_Free 0.134
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.912 39.288 38.800 90.00 117.41 90.00
method X-Ray Diffractionresolution 1.01 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (5e1y.pdb1.gz) 59 Kb
  • CSU: Contacts of Structural Units for 5E1Y
  • Structure Factors (351 Kb)
  • Retrieve 5E1Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E1Y from S2C, [Save to disk]
  • Re-refined 5e1y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E1Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5E1Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e1y_A] [5e1y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5E1Y
  • Community annotation for 5E1Y at PDBWiki (http://pdbwiki.org)

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