5E3O Dna Binding Protein Dna date Oct 03, 2015
title Crystal Structure Of Fis Bound To 27bp Dna F32 (Aaatttggaggaattttctccaaattt)
authors S.P.Hancock, D.Cascio, R.C.Johnson
compound source
Molecule: Dna-Binding Protein Fis
Chain: A, B
Synonym: Factor-For-Inversion Stimulation Protein,Hin Recom Enhancer-Binding Protein;
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Fis, B3261, Jw3229
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a

Molecule: Dna (27-Mer)
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (27-Mer)
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.190 94.320 154.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.78 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • bacterial-type RNA polymeras...
  • bacterial-type RNA polymeras...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (5e3o.pdb1.gz) 107 Kb
  • CSU: Contacts of Structural Units for 5E3O
  • Structure Factors (155 Kb)
  • Retrieve 5E3O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E3O from S2C, [Save to disk]
  • Re-refined 5e3o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E3O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5E3O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e3o_C] [5e3o_B] [5e3o] [5e3o_D] [5e3o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5E3O
  • Community annotation for 5E3O at PDBWiki (http://pdbwiki.org)

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