5E4G Hormone date Oct 06, 2015
title Crystal Structure Of Human Growth Differentiation Factor 11
authors A.K.Padyana, B.Vaidialingam, D.B.Hayes, P.Gupta, M.Franti, N.A.Fa
compound source
Molecule: Growthdifferentiation Factor 11
Chain: A
Fragment: Unp Residues 299-407
Synonym: Gdf-11, Bone Morphogenetic Protein 11, Bmp-11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gdf11, Bmp11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.188 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.270 32.270 210.602 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand PG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of human GDF11., Padyana AK, Vaidialingam B, Hayes DB, Gupta P, Franti M, Farrow NA, Acta Crystallogr F Struct Biol Commun. 2016 Mar 1;72(Pt 3):160-4. doi:, 10.1107/S2053230X16001588. Epub 2016 Feb 16. PMID:26919518
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (5e4g.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 5E4G
  • CSU: Contacts of Structural Units for 5E4G
  • Structure Factors (362 Kb)
  • Retrieve 5E4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E4G from S2C, [Save to disk]
  • Re-refined 5e4g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E4G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5e4g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e4g_A] [5e4g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5E4G: [TGFB ] by SMART
  • Other resources with information on 5E4G
  • Community annotation for 5E4G at PDBWiki (http://pdbwiki.org)

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