5E63 K262A mutant of I-SmaMI date
authors Shen, B., Stoddard, B.
compound source
symmetry
R_factor
R_Free 0.27861
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand MG, MXE, PG0 enzyme
Gene SMAC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structural Basis of Asymmetry in DNA Binding and Cleavage as Exhibited by the I-SmaMI LAGLIDADG Meganuclease., Shen BW, Lambert A, Walker BC, Stoddard BL, Kaiser BK, J Mol Biol. 2015 Dec 15. pii: S0022-2836(15)00696-8. doi:, 10.1016/j.jmb.2015.12.005. PMID:26705195
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (5e63.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 5E63
  • CSU: Contacts of Structural Units for 5E63
  • Structure Factors (231 Kb)
  • Retrieve 5E63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E63 from S2C, [Save to disk]
  • Re-refined 5e63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5E63
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e63] [5e63_B] [5e63_A] [5e63_C] [5e63_D] [5e63_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5E63
  • Community annotation for 5E63 at PDBWiki (http://pdbwiki.org)

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