5E6B	Dna Binding Protein Dna	date	Oct 09, 2015
title	Glucocorticoid Receptor Dna Binding Domain - Relb Nf-Kb Resp Element Complex
authors	W.H.Hudson, E.A.Rye, A.G.Herbst, E.A.Ortlund
compound		source
Molecule: Glucocorticoid Receptor Chain: A, B Fragment: Unp Residues 391-480 Synonym: Gr,Nuclear Receptor Subfamily 3 Group C Member 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr3c1, Grl Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Plyss
Molecule: Dna (5'-D(Cpgpgpcpgpgpapaptptpcpcpcp 3'); Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Dna (5'-D(Cpcpgpgpgpgpapaptptpcpcpgp 3'); Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.204 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.185 97.045 103.329 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Cryptic glucocorticoid receptor-binding sites pervade genomic NF-kappaB response elements., Hudson WH, Vera IMS, Nwachukwu JC, Weikum ER, Herbst AG, Yang Q, Bain DL, Nettles KW, Kojetin DJ, Ortlund EA, Nat Commun. 2018 Apr 6;9(1):1337. doi: 10.1038/s41467-018-03780-1. PMID:29626214

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (5e6b.pdb1.gz) 38 Kb LPC: Ligand-Protein Contacts for 5E6B CSU: Contacts of Structural Units for 5E6B Structure Factors (324 Kb) Retrieve 5E6B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5E6B from S2C, [Save to disk] Re-refined 5e6b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5E6B in 3D

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Visual 3D analysis of 5E6B

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5e6b from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5e6b_A] [5e6b_C] [5e6b_D] [5e6b] [5e6b_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5E6B

Community annotation for 5E6B at PDBWiki (http://pdbwiki.org)

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