5E6H	Oxidoreductase	date	Oct 09, 2015
title	A Linked Jumonji Domain Of The Kdm5a Lysine Demethylase
authors	J.R.Horton, X.Cheng
compound		source
Molecule: Lysine-Specific Demethylase 5a Chain: A Synonym: Histone Demethylase Jarid1a,Jumonjiarid Domain-Co Protein 1a,Retinoblastoma-Binding Protein 2,Rbbp-2,Histone Demethylase Jarid1a,Jumonjiarid Domain-Containing Protein Retinoblastoma-Binding Protein 2,Rbbp-2; Ec: 1.14.11.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdm5a, Jarid1a, Rbbp2, Rbp2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Goldc-Plus
symmetry	Space Group: C 1 2 1	R_factor 0.179 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.365 61.591 46.583 90.00 92.55 90.00
method	X-Ray Diffraction	resolution	2.24 Å
ligand	AKG, GOL, MN	enzyme	Oxidoreductase E.C.1.14.11 BRENDA
Primary reference	Characterization of a linked Jumonji domain of the KDM5/JARID1 family of histone H3 lysine 4 demethylases., Horton JR, Engstrom A, Zoeller EL, Liu X, Shanks JR, Zhang X, Johns MA, Vertino PM, Fu H, Cheng X, J Biol Chem. 2015 Dec 8. pii: jbc.M115.698449. PMID:26645689

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (5e6h.pdb1.gz) 100 Kb LPC: Ligand-Protein Contacts for 5E6H CSU: Contacts of Structural Units for 5E6H Structure Factors (136 Kb) Retrieve 5E6H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5E6H from S2C, [Save to disk] Re-refined 5e6h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5e6h_A] [5e6h] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5E6H: [JmjC] [JmjN ] by SMART

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