5E6M	Ligase Rna	date	Oct 10, 2015
title	Crystal Structure Of Human Wild Type Glyrs Bound With Trnagl
authors	W.Xie, X.Qin, X.Deng, L.Chen, Y.Liu
compound		source
Molecule: Glycine--Trna Ligase Chain: A, B Fragment: Unp Residues 55-739 Synonym: Diadenosine Tetraphosphate Synthetase,Ap-4-A Synth Glycyl-Trna Synthetase,Glyrs; Ec: 6.1.1.14 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela Cells Gene: Gars Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b(+)
Molecule: Trna(Gly) Chain: C, E Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.194 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 206.864 122.200 84.727 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.93 Å
ligand	GAP, GTP, NI, SO4	enzyme	Ligase E.C.6.1.1.14 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure of the Wild-Type Human GlyRS Bound with tRNAGly in a Productive Conformation., Qin X, Deng X, Chen L, Xie W, J Mol Biol. 2016 May 31. pii: S0022-2836(16)30187-5. doi:, 10.1016/j.jmb.2016.05.018. PMID:27261259

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk] Biological Unit Coordinates (5e6m.pdb1.gz) 223 Kb LPC: Ligand-Protein Contacts for 5E6M CSU: Contacts of Structural Units for 5E6M Structure Factors (887 Kb) Retrieve 5E6M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5E6M from S2C, [Save to disk] Re-refined 5e6m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5E6M in 3D

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Visual 3D analysis of 5E6M

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5e6m_B] [5e6m_A] [5e6m_E] [5e6m_C] [5e6m] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5E6M: [WHEP-TRS ] by SMART

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