5E6P	Signaling Protein	date	Oct 10, 2015
title	Plexinb2 Cytoplasmic Regionpdz-Rhogef Pdz Domain Complex
authors	H.G.Pascoe, X.Zhang
compound		source
Molecule: Plexin-B2 Chain: A Fragment: Unp Residues 1226-1842 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Plxnb2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Arctic Express Expression_system_vector_type: Plasmid Expression_system_plasmid: Pskb2
Molecule: Rho Guanine Nucleotide Exchange Factor 11 Chain: B Fragment: Pdz Domain (Unp Residues 42-125) Synonym: Pdz-Rhogef Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Arhgef11, Kiaa0380 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pskb2
symmetry	Space Group: P 62 2 2	R_factor 0.254 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 126.152 126.152 211.465 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.22 Å
Gene Ontology	Chain Function Process Component A B
Primary reference	Secondary PDZ domain-binding site on class B plexins enhances the affinity for PDZ-RhoGEF., Pascoe HG, Gutowski S, Chen H, Brautigam CA, Chen Z, Sternweis PC, Zhang X, Proc Natl Acad Sci U S A. 2015 Dec 1;112(48):14852-7. doi:, 10.1073/pnas.1508931112. Epub 2015 Nov 16. PMID:26627240

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk] Biological Unit Coordinates (5e6p.pdb1.gz) 192 Kb CSU: Contacts of Structural Units for 5E6P Structure Factors (150 Kb) Retrieve 5E6P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5E6P from S2C, [Save to disk] Re-refined 5e6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5E6P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5E6P

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5e6p_A] [5e6p_B] [5e6p] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5E6P: [PDZ ] by SMART

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