5E85 Chaperone date Oct 13, 2015
title Isolated Sbd Of Bip
authors Q.Liu, J.Yang, M.Nune, Y.Zong, L.Zhou
compound source
Molecule: 78 Kda Glucose-Regulated Protein
Chain: A
Fragment: Unp Residues 418-637
Synonym: Grp-78,Endoplasmic Reticulum Lumenal Ca(2+)-Bindin Grp78,Heat Shock 70 Kda Protein 5,Immunoglobulin Heavy Chai Protein,Bip;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hspa5, Grp78
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: C 2 2 21
R_factor 0.219 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.378 91.661 141.797 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.57 Å
ligand SO4 enzyme
Primary referenceClose and Allosteric Opening of the Polypeptide-Binding Site in a Human Hsp70 Chaperone BiP., Yang J, Nune M, Zong Y, Zhou L, Liu Q, Structure. 2015 Dec 1;23(12):2191-203. doi: 10.1016/j.str.2015.10.012. Epub 2015 , Nov 19. PMID:26655470
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5e85.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 5E85
  • CSU: Contacts of Structural Units for 5E85
  • Structure Factors (125 Kb)
  • Retrieve 5E85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E85 from S2C, [Save to disk]
  • Re-refined 5e85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5E85
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e85] [5e85_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5E85
  • Community annotation for 5E85 at PDBWiki (http://pdbwiki.org)

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