5E8B date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BEN, NA enzyme
Primary referenceThe Histone Modification Domain of Paf1 Complex Subunit Rtf1 Directly Stimulates H2B Ubiquitylation through an Interaction with Rad6., Van Oss SB, Shirra MK, Bataille AR, Wier AD, Yen K, Vinayachandran V, Byeon IL, Cucinotta CE, Heroux A, Jeon J, Kim J, VanDemark AP, Pugh BF, Arndt KM, Mol Cell. 2016 Nov 17;64(4):815-825. doi: 10.1016/j.molcel.2016.10.008. Epub 2016, Nov 10. PMID:27840029
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (5e8b.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (5e8b.pdb2.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 5E8B
  • CSU: Contacts of Structural Units for 5E8B
  • Structure Factors (142 Kb)
  • Retrieve 5E8B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E8B from S2C, [Save to disk]
  • Re-refined 5e8b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E8B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e8b] [5e8b_A] [5e8b_B]
  • SWISS-PROT database:

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