5E8I Dna Binding Protein Dna date Oct 14, 2015
title Crystal Structure Of The Dna Binding Domain Of Human Transcr Factor Fli1 In Complex With A 10-Mer Dna Accggaagtg
authors C.Hou, O.V.Tsodikov
compound source
Molecule: Friend Leukemia Integration 1 Transcription Facto
Chain: A, D, G, J
Fragment: Unp Residues 276-399
Synonym: Proto-Oncogene Fli-1,Transcription Factor Ergb
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fli1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: Dna (5'-D(Apcpcpgpgpapapgptpg)-3')
Chain: B, E, H, K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Endothia Gyrosa
Organism_taxid: 40263

Molecule: Dna (5'-D(Cpapcptptpcpcpgpgpt)-3')
Chain: C, F, I, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Endothia Gyrosa
Organism_taxid: 40263
symmetry Space Group: P 31 2 1
R_factor 0.222 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.647 86.647 230.282 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.45 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


Primary referenceStructural Basis for Dimerization and DNA Binding of Transcription Factor FLI1., Hou C, Tsodikov OV, Biochemistry. 2015 Dec 10. PMID:26618620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5e8i.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (5e8i.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5E8I
  • CSU: Contacts of Structural Units for 5E8I
  • Structure Factors (224 Kb)
  • Retrieve 5E8I in mmCIF format [Save to disk]
  • Re-refined 5e8i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E8I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E8I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5e8i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e8i_F] [5e8i_H] [5e8i_I] [5e8i_E] [5e8i_B] [5e8i_C] [5e8i] [5e8i_L] [5e8i_K] [5e8i_G] [5e8i_A] [5e8i_D] [5e8i_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5E8I: [ETS ] by SMART
  • Other resources with information on 5E8I
  • Community annotation for 5E8I at PDBWiki (http://pdbwiki.org)

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