5E9W	Transferase	date	Oct 15, 2015
title	Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase O Limited Proteolysis
authors	P.Petit, V.H.Cowling
compound		source
Molecule: Mrna Cap Guanine-N7 Methyltransferase Chain: A, B, C, D Fragment: Unp Residues 165-476 Synonym: Rg7mt1,Mrna (Guanine-N(7)-)-Methyltransferase,Mrna Methyltransferase,Hcm1p; Ec: 2.1.1.56 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rnmt, Kiaa0398 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15
symmetry	Space Group: P 21 21 21	R_factor 0.220 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.458 99.157 167.614 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.28 Å
ligand	SAH	enzyme	Transferase E.C.2.1.1.56 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Molecular basis of RNA guanine-7 methyltransferase (RNMT) activation by RAM., Varshney D, Petit AP, Bueren-Calabuig JA, Jansen C, Fletcher DA, Peggie M, Weidlich S, Scullion P, Pisliakov AV, Cowling VH, Nucleic Acids Res. 2016 Jul 15. pii: gkw637. PMID:27422871

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (380 Kb) [Save to disk] Biological Unit Coordinates (5e9w.pdb1.gz) 95 Kb Biological Unit Coordinates (5e9w.pdb2.gz) 96 Kb Biological Unit Coordinates (5e9w.pdb3.gz) 96 Kb Biological Unit Coordinates (5e9w.pdb4.gz) 96 Kb LPC: Ligand-Protein Contacts for 5E9W CSU: Contacts of Structural Units for 5E9W Structure Factors (3570 Kb) Retrieve 5E9W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5E9W from S2C, [Save to disk] Re-refined 5e9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5E9W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5E9W

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5e9w_D] [5e9w_B] [5e9w] [5e9w_C] [5e9w_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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