5EA1 Transcription date Oct 15, 2015
title Crystal Structure Of Smarca4 Bromodomain In Complex With Mpd
authors G.Lolli, A.Caflisch
compound source
Molecule: Transcription Activator Brg1
Chain: A, B, C
Fragment: Bromodomain, Unp Residues 1451-1580
Synonym: Atp-Dependent Helicase Smarca4,Brg1-Associated Fac Baf190a,Mitotic Growth And Transcription Activator,Protein Protein Brahma Homolog 1,Snf2-Beta,Swisnf-Related Matrix-A Actin-Dependent Regulator Of Chromatin Subfamily A Member 4
Ec: 3.6.4.-
Engineered: Yes
Other_details: First Two Residues Sm Derive From The Expres
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarca4, Baf190a, Brg1, Snf2b, Snf2l4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.192 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.783 86.783 97.959 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand MPD, MRD enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (5ea1.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (5ea1.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (5ea1.pdb3.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 5EA1
  • CSU: Contacts of Structural Units for 5EA1
  • Structure Factors (1846 Kb)
  • Retrieve 5EA1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EA1 from S2C, [Save to disk]
  • Re-refined 5ea1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EA1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EA1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w5ea1, region A:23-231 [Jmol] [rasmolscript] [script source]
  • Fold representative 5ea1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ea1_B] [5ea1_A] [5ea1] [5ea1_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EA1: [BROMO ] by SMART
  • Other resources with information on 5EA1
  • Community annotation for 5EA1 at PDBWiki (http://pdbwiki.org)

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